How to BLAST a FASTA sequence with unknown organism source
0
0
Entering edit mode
14 months ago
Sd • 0

I have a FASTA file including seven following contigs that I cannot find the origin of these contigs.

>chrZ_001422_local
>chrZ_012849_local
>chrZ_012851_local
>chrZ_012855_local
>chrZ_012856_local
>chrZ_012857_local
>chrZ_014931_local

I tried many BLAST tools such as ENSEMBLE, and NCBI and I could not able to identify these contigs which organisms related to. Does any one know any approach that I can search among all organisms (both vertebrates and invertebrates) to identify the origin of these contigs?

chrZ BLAST FASTA • 544 views
ADD COMMENT
3
Entering edit mode

Just run BLAST (whatever algorithm appeals most) on your sequences against all of NR.

ADD REPLY

Login before adding your answer.

Traffic: 2288 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6