How to obtain data on the specific location of the segumental duplication.

Question

[ayasu]

I know it can be viewed from the Repeats segemental dups at the bottom of the UCSC, but I would like to view it in the IGV, not the UCSC.

So I looked for the golden path in UCSC to find the segemental dups data file, but could not find where it is.

I am looking for it in hg19, where should I look next?

Answer 1

[Pierre Lindenbaum]

Segmental Dups Track Settings

http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=genomicSuperDups

https://hgdownload.soe.ucsc.edu/goldenPath/hg19/database/genomicSuperDups.txt.gz

[ayasu]

Thanks for the quick reply! I was able to get the data files from that link.