Retrieving rs IDs from chromosome, position, and alleles
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13 months ago
Jaehyun ▴ 10

Hello,

I would like to ask whether I could get rs IDs of variants with chromosome, position, and allele information.

I tried the previous method from this post. The method worked, but since it uses only chromosome and position, there were some variants that were mapped to multiple rs IDs. (For example, chr22:10527916 was mapped to rs1206592395, rs1263429998, and rs1353287195)

I also have allele information of the variants (A, C, G, T), and I want to use this in the mapping. I would like to know if there is a method to map the variants, BEDOPS or another, using the positional and allelic information.

Thank you.

SNP GWAS • 379 views
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