How to interpret the Variant Allele Frequency??
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13 months ago

I am new to the field of Bioinformatics and seeking guidance. I am currently in the process of calculating the Variant Allele Frequency (VAF) using the VarScan software. I have obtained the results and have included screenshots for reference. I would greatly appreciate assistance in understanding how to interpret these results.

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CHROM   POS ID  REF ALT QUAL    FILTER  INFO    FORMAT  Sample1

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VarScan Variant-allele-frequency • 668 views
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13 months ago
DareDevil ★ 4.3k
Variant allele frequency (VAF) = Depth at Altered Allele / Total Depth

Total depth = Depth at Altered Allele + Depth at Reference Allele
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