Visualization of rMATS output

Question

[dina.hesham139]

Hey,

I'm using rMATS for the first time for alternative splicing analysis. How do I proceed after running the main script and getting the output? For example, how to visualize the output?

Thanks in advance.

Answer 1

[jakub]

You can visualise your significant differential splicing sites using this tool:

http://www.mimg.ucla.edu/faculty/xing/rmats2sashimiplot/

There is a tutorial on how to run it, and it produces a folder full of pdfs for all your differential splicing events. One thing to note is that it requires an equal number of control and treatment samples, unlike rmats itself.

Jakub

[dina.hesham139]

Thank you, I'll try that.

[Y]

Are there any other software(s) that can be used to do this other than rMats2sashimiplot?