How to give the defined p value in MACS2 command line (peak calling)

Question

[lonekaisar72]

I am using this command line for peak calling but it automatically sets the p-value to 0 .05 I want to change it to 0.01. Please suggest where I have to set it to 0.01

Please suggest This is my command line macs2 callpeak -t test_sorted.bam -c control_sorted.bam -f BAM -g hs -n testvscont -B --outdir testvscont _macs2

[Pierre Lindenbaum]

how about your previous question ? error in Fastq

[lonekaisar72]

Thanks its sorted

[ATpoint]

then upvote and accept, that's what he was asking you.

[Pierre Lindenbaum]

macs2 callpeak --help

Answer 1

[ATpoint]

Please read the manual, it's all there: https://github.com/macs3-project/MACS/blob/master/docs/callpeak.md