Circular genome browser

Question

[giammafer]

I am trying to find an interactive genome browser to embed in my code. I would like to have a circular visualisation also for the homo sapiens. I found some python packages that can visualise the human genome in a circular shape (vcf2circos, pyCirclize). However, they create static figures that cannot be browsed by the user.

Please, let me know if you have some suggestions.

[cmdcolin]

I have a collection of tools I have tagged as 'circular' here https://cmdcolin.github.io/awesome-genome-visualization/?latest=true&tag=Circular

i don't yet have a good filter for interactive vs non-interactive yet though, and they have varying degrees of re-usability. If you also specify what type of data you want to visualize, it may help (e.g. the structural variant "arcs" going through the center, or other coverage for CNV, etc)

[giammafer]

Thank you very much for organising the 'awesome-genome-visualization' collection. I searched in your database before I made this question on Biostars. As you know, I was looking for an interactive circular visualisation in Python. I set the filters as Circular-Python_interactive but I got any results (I tried also with other languages). However, I think you created a very useful source for those who need genomic visualisation tools.

[cmdcolin]

that's great to hear. one "proxy" for interactive is looking at the JS based tools, many are web based and interactive as a result. I have to do better in general about tagging things as interactive though!

Answer 1

[Pierre Lindenbaum]

gosling ? e.g: https://gosling.js.org/?example=LINKING

[giammafer]

Thanks for this valuable suggestion