Is it necessary to give a "limit" SPARQL Disgenet query search?

Question

[alirejwan.stars1994]

Is the limit option necessary in the DISGENET RDF SPARQL endpoint?

I trying to extract the shared gene between two associated diseases through the DisGeNET RDF SPARQL Endpoint.

Is it necessary to give the limit? how could I access the whole data from the disgenet database?

[al.bodrug]

Does anyone know where the new disgenet sparql endpoint is?

[GenoMax]

Looks like this resource may no longer be available via RDF.

License fees are applicable for the commercial use of DISGENET. Users from not-for-profit organizations who plan to use DISGENET for non-commercial purposes can apply for free access (through an Academic license). Users who plan to use DISGENET for commercial purposes and/or belong to for-profit organizations must pay a fee to acquire a DISGENET license.

Answer 1

[Pierre Lindenbaum]

Is the limit option necessary in the DISGENET RDF SPARQL endpoint?

NO, if your talking about my previous answer Extract of no. shared gene names in disease-disease association though API from Disgenet Database But it makes things faster.

how could I access the whole data from the disgenet database?

I cannot find a RDF data dump. You can always select all statements from the RDF database (export as RDF) ?

SELECT ?a ?b ?c WHERE { ?a ?b ?c . }

[alirejwan.stars1994]

Thank so much for your rapid response and your time to look into in the query.

When I applied your statements I can only access to 72000 association (LIMIT =72000), in which only 4 Candidiasis and is associated disease and one shared gene were received and I want to increase the number of shared gene for my further analysis.

Can I search specifically? If I want to access the data of shared genes between candidiasis and its associated disease, with some statistical value like GDA score? Is it possible? So its a humble request, is there any possible way out to solve this problem.

[Pierre Lindenbaum]

limit to the disease associated to Candidiasis. How ? I don't have the motivation/time to look at this. Learn sparql, look at the provided examples, ask the disgenet support, etc...

[alirejwan.stars1994]

Ok, Thank you so much