Best software to get summary statistics from nanopore sequencing runs

Question

[Mark]

Hi,

I'm looking for the recommended software to get summary statistics for nanopore sequencing experiments. I'm currently using Mosdepth to estimate coverage and depth across different sequencing runs, but I'm looking for a program that will give me more info.

Specifically I'm looking for a program that will tell me the mean, median, and mode read lengths, the minimum read length, the maximum read length, and the N50.

I came across nanostat (https://github.com/wdecoster/nanostat) but I'm wondering if there are better/other recommended softwares.

[andres.firrincieli]

Have you looked at pycoQC?

[GenoMax]

PycoQC is great but it requires the original sequencing summary file from the run to work.

Answer 1

[GenoMax]

You want cramino which is a replacement for nanostat.: Introducing Cramino: a *fast* QC tool for long reads

[Mark]

perfect thank you