how to use pilon
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12 months ago
vasudhapai • 0

hello, i am confused with what should exactly be used in the --genome and --frags parameter suppose I have a sequence taken from SRA then how do I continue with this.
genome pipelines assembly pilon contig • 617 views
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https://github.com/broadinstitute/pilon

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Start with quality control then alignment of the raw reads.

https://github.com/broadinstitute/pilon/wiki/Requirements-&-Usage

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