bam or VCF files from GSE75010

Question

[ahonya]

Hi all

I'm planning to run a variant calling analysis using Microarray data GSE75010 that contains GSE75010_RAW.tar and GSE75010_complete_dataset.csv.gz. I used to download the .fastq files using SRA Run numbers through Ubuntu/Linux to get .bam and VCF files. However, this is not the case as there are no SRA numbers. Someone can help me?

Regards,

Bony

Answer 1

[ATpoint]

It's a gene expression array, not RNA-seq. Arrays do not allow variant calling as there is no digital sequencing data created.