How to get multiple protein domain database domain name from id's

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11 months ago

Nicolas • 0

Hello i got a blast2go output with a column with id's from multiple databases suported by interpro but i need the domain names so i can filter the data someone know how can i do it?

My data looks like this for each sequence i submited an i have nealy 5000 proteins sequences: IPR002048 (SMART); SM00368 (SMART); IPR032675 (G3DSA:3.80.10.GENE3D); G3DSA:1.10.238.10 (GENE3D); IPR001611 (PFAM); IPR002048 (PFAM); IPR032675 (G3DSA:3.80.10.GENE3D); PTHR24114 (PANTHER); IPR002048 (PROSITE_PROFILES); IPR002048 (PROSITE_PROFILES); IPR002048 (CDD); SSF52047 (SUPERFAMILY); IPR011992 (SUPERFAMILY)

annotations blast2go domain domains proteins • 470 views

ADD COMMENT • link updated 11 months ago by GenoMax 147k • written 11 months ago by Nicolas • 0

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A list of InterPro domains is available: https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/entry.list

ADD REPLY • link 11 months ago by GenoMax 147k

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