Example MAF Files

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12 months ago

anasjamshed ▴ 140

I need some example MAF files. From where can I download?

MAF • 860 views

ADD COMMENT • link updated 12 months ago by Ram 44k • written 12 months ago by anasjamshed ▴ 140

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Anas, you NEED to start investing more effort. You've been on the forum long enough to know that you need to search around and put in some work before asking for help here.

ADD REPLY • link 12 months ago by Ram 44k

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https://github.com/search?q=+path%3A*.maf+chr22&type=code (beware, not all files are true MAF files here...)

ADD REPLY • link 12 months ago by Pierre Lindenbaum 164k

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What is the difference between maf and vcf files?

ADD REPLY • link 12 months ago by anasjamshed ▴ 140

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https://genome.ucsc.edu/FAQ/FAQformat.html#format5 vs https://genome.ucsc.edu/goldenPath/help/vcf.html

ADD REPLY • link 12 months ago by Pierre Lindenbaum 164k

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This might sound sarcastic, but its not: one contains alignments, the other is variant calls - the latter doesn't necessarily require that it gives you the alignments to be able to give you the variant information.

ADD REPLY • link 12 months ago by Joe 21k

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