Error: Require Genotypes in VCF file in order to output IMPUTE format.
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Entering edit mode
9 months ago
Warrenkb • 0

Hello,

I am trying to export a VCF file in IMPUTE format and keep getting the same error message:

Code:

module load htslib/1.17
module load samtools/1.17
module load bcftools/1.17
module load java/17.0.8
module load python3
module load vcftools

vcftools --vcf name.vcf --IMPUTE
Error: Require Genotypes in VCF file in order to output IMPUTE format.

I am not sure why I am getting an error message because the genotypes are in the file. Here are the first few lines of my VCF file:

VCF FILE INFORMATION

I would very much appreciate the help.

vcftools VCF • 355 views
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