Annotate BED file

Question

[Andrea]

I have this bed file with the coverage of each sequenced region; I would like to add the gene_id to each region. How can I do?

[Pierre Lindenbaum]

please, review all your previous questions, and comment or validate them (tick on the left) if they were resolved. DeSeq2 Matched Analysis ; Import quant.sf files ; Issue VEP installation MacOS ; AlphaMissense Plugin VEP ;

Answer 1

[Pierre Lindenbaum]

get a bed file with the gene ID ( How can I get .bed file that have unique Entrez gene id (or symbol) for deeptools? ) and use bedtools intersect