Tajima's D
0
0
Entering edit mode
11 months ago
sevda • 0

Hello

I need calculate Tajima's D but vcftools deprecated which software can I utilize?
Tajimas-D • 799 views
ADD COMMENT •
0
Entering edit mode

why do you think is deprecated? I see it on the manual

ADD REPLY •
1
Entering edit mode

vcftools received its last update in 2018 where as bcftools is being actively developed.

How to calculate Tajima's D using bcftools : https://github.com/johnlees/tajima-D

ADD REPLY •
1
Entering edit mode

Fair to mention that the windowed calculation is built-in in vcftools while you need to compile the app from github for use with bcftools.

ADD REPLY •
0
Entering edit mode

You can use this tool called vcf2tajima https://github.com/xoaib4/vcf2tajima

ADD REPLY •

Login before adding your answer.

Similar Posts
Loading Similar Posts
Traffic: 1920 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6