recessive model in saige
0
0
Entering edit mode
11 months ago
ccagg ▴ 60

Is there a way to do a recessive model in the R package SAIGE for a GWAS? For example, in PLINK you might specify:

plink2 --bfile <input file>  -pheno <pheno file> --glm recessive --out <output> 

I have seen some papers referencing using SAIGE with a recessive instead of additive model (ex: DOI:10.1038/s41586-022-05420-7), but it is not clear to me how to do this reading the most recent SAIGE documentation

GWAS • 311 views
ADD COMMENT

Login before adding your answer.

Traffic: 1658 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6