Question

BUSCO v3 eukaryotic database

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10 months ago

ccruz • 0

Hello,

Does someone have a zip file of the BUSCO v3 eukaryotic database?

Cheers

genome assembly BUSCO • 991 views

ADD COMMENT • link updated 3 months ago by GenoMax 147k • written 10 months ago by ccruz • 0

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which i want to know is that if the datasets for v4/v5 are also appropriate for v3?

ADD REPLY • link 3 months ago by chauncyliang • 0

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because i run BUSCO v3 with error of augustus, i want to have try with datasets db09.

ADD REPLY • link 3 months ago by chauncyliang • 0

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Please ask the developers by creating an issue here: https://gitlab.com/ezlab/busco/-/issues

ADD REPLY • link 3 months ago by GenoMax 147k

score 1 · Answer 1 · 2024-01-10

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10 months ago

GenoMax 147k

ADD COMMENT • link 10 months ago by GenoMax 147k

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Thank you, but in the following paper (https://www.sciencedirect.com/science/article/pii/S2211926420301016#f0015) they use BUSCO v3 and all their BUSCO gene names start with EOG. I am trying to obtain the sequences of these genes but I haven't been able to find them.

ADD REPLY • link 10 months ago by ccruz • 0

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I see. You may need to ask EZlab directly about this since only v.4/v.5 data seems to be now available.