Shovill running error 256

Question

[davidmaimoun]

Hello,

I am trying to run shovill in a virtual machine that run on ubuntu 22.04

I don't know why I get an error 256

Running: spades.py --pe1-1 flash.notCombined_1.fastq.gz --pe1-2 flash.notCombined_2.fastq.gz --s2 flash.extendedFrags.fastq.gz --only-assembler --threads 4 --memory 8 -o . --tmp-dir /tmp -k 31,55,79,103,127  >> /dev/null 2>&1
Error 256 running command

My Code:

shovill --outdir {out_dir} --force --R1 {R1} --R2 {R2} >> {log} 2>&1

I use to do my assemblies why SPAdes, but this on doesn't work on python3.11 (and I heard shovill is better anyway)

Can you help me please?

Thank you