What do you usually use for QC using DNBseq?

0

Entering edit mode

10 months ago

ev97 ▴ 40

I am used to analyse Illumina data and I recently got data from DNBseq... I have run FastQC but I am wondering if it is a good choice for this type of data... since this tool has been created for Illumina (or at least, it is what I have seen till now).

Does anybody use another tool for quality control for DNBseq data?

Any feedback will be really appreciated.

Thanks in advance

Regards

DNBseq fastqc qc Illumina RNA-seq • 547 views

ADD COMMENT • link updated 10 months ago by GenoMax 147k • written 10 months ago by ev97 ▴ 40

0

Entering edit mode

If this is complete genomics data then there should be nothing special about it. FastQC should still be fine.

ADD REPLY • link 10 months ago by GenoMax 147k

0

Entering edit mode

Sorry I forgot to mention that I was working with RNA-seq data. Would it be still fine?

(Cause complete genomics data =whole genome sequencing, right?) **Thanks very much for your reply!!!

ADD REPLY • link 10 months ago by ev97 ▴ 40

1

Entering edit mode

Type of data should not matter. AFAIK DNBSeq data is still sanger encoded.

ADD REPLY • link 10 months ago by GenoMax 147k

Login before adding your answer.