Annotate wormbase genes

Question

[leranwangcs]

I need to annotated my gene IDs which are wormbase genes, and the gene IDs look like this:

WBGene00000001
WBGene00000002
WBGene00000003

I cannot find the right R package for doing this. Anyone has good suggestions?

Thanks!

[Ram]

Where did you get these IDs from?

Ah, they are wormbase IDs, not worm based genes. The metadata for this can be downloaded as a TSV file here: https://raw.githubusercontent.com/biopragmatics/bioregistry/main/exports/registry/registry.tsv

Other formats and downloads: https://bioregistry.io/download

Please Google before asking here. I literally just had to google the first ID.

[leranwangcs]

Thank you so much for pointing my mistakes out! And the table is very useful.

[GenoMax]

R annotation package for C. elegans: https://bioconductor.org/packages/release/data/annotation/html/org.Ce.eg.db.html