how to download BF ,CC and MF

Question

[Bioinfo]

Hello all,

I am trying to find a way to download Biological function, cellular component and molecular function and or any other informations for whole proteome of dictyostelium discoideum in uniprot. is there a way someone could help me with that ?

[mathavanbioinfo]

Hi You can import the protein sequences or gene symbol into the STRING database, and it will provide you with gene ontology results

[Bioinfo]

No, you should do one by one, I just want to download the entire proteome with those info then I extract what I need myself

Answer 1

[geneontologyhelp]

Hi,

You probably want http://current.geneontology.org/annotations/dictybase.gaf.gz

We recommend downloading Gene Ontology products (here, specifically annotations) directly from our site. UniProt makes releases every 8 weeks, and there can be a noticeable discrepancy between that product and the monthly GO releases depending on timing of the releases.

To find the latest Dicty data in GPAD or GAF format, you can always use http://current.geneontology.org/annotations/ and grab either dictybase.gaf.gz or both dictybase.gpad.gz & dictybase.gpi.gz. Find GAF 2.2 file format specs on our site.

For reproducibility, remember to cite the GO and use the release version- it will look something like 2024-01-17 (if you use the above method, you can find the version in current.geneontology.org/summary.txt ).

You can also access 20 years of archives at release.geneontology.org/[version]