Biological Data Management

Question

[m90]

hello everyone ,

my company have server that they store all their data in it , "DNA , RNA , Protein" and the first task they want me to do is to reorganize the data . is anyone know the workflow for biological data management?

[Pierre Lindenbaum]

First review all your previous questions, and mark them as answered if needed. How to know the sample total read in SRA ; How to download 10 sequence for specific disease in NCBI ; how to discover the dissimilar regions in alignment using pyhton? ; how to discover the dissimilar regions in alignment using pyhton? ; visualize CD-HIT output file ; how to split RNA-seq into codons by using python ; how to convert output of bash script to .csv ? ; how to apply DE-kupl in my data for differential expression ? ; HISAT2: Question regarding providing file path to indexed genome folder ; align using file.ht2 ; Bioinformatics ;

second,this question is too general. Give more details on your input and desired output. Also, what have you tried so far?

[Matthias Zepper]

Maybe these public course slides from the Swedish National Bioinformatics Infrastructure course "Data Management Practices" will be helpful:

• Slides collection from https://doi.org/10.17044/scilifelab.c.6820587.v3
• Introduction to Data Management Practices for NGI

Please cite the respective authors of the modules, should you find information helpful, and reuse it in your company's materials.