Correlating Chip-Seq and proteimics results

Question

[Assa Yeroslaviz]

I would like to understand what is the best way to compare ChIP-Seq and proteomics results. Unfortunately it is not like comparing RNA-Seq and proteomics, where I have two tables of expression values. Here I have a list of peaks and a list of intensities.

It would be great if someone can point me to a paper, where something similar was done.

thanks Assa