Hello All,
I'm attempting to run DeepTMHMM on Docker. Due to the size of my fasta file, I prefer running it locally rather than using the web based system. Unfortunately, my attempts to run it on my Mac and my linux (ubuntu) system were unsuccessful. Now, I am trying to run it on my windows machine. However, after this last attempt, I officially give up.
With my Mac and my linux system, the issue was compatibility (linux/arm64 vs linux/amd64). With windows, I do not see that error. Here is the command, I have used:
docker run -v ${PWD}/test:/data deeptmhmm/deeptmhmm /data/test.fasta
Here is the error message that I get:
docker: Error response from daemon: failed to create task for container: failed to create shim task: OCI runtime create failed: runc create failed: unable to start container process: exec: "/data/test.fasta": stat /data/test.fasta: no such file or directory: unknown.
When I look at the contents of /data using this,
docker run deeptmhmm/deeptmhmm ls /data
I get an error message saying that the directory does not exist. However, when I try to create a directory /data, it says
mkdir: cannot create directory '/data': File exists
Has anyone faced a similar issue?
Did you find a solution?