Error in CIBERSORTx ($ operator is invalid for atomic vectors)

Question

[star]

Hi,

I'm trying to run CIBERSORTx but keep getting the following error:

I can't figure out what's causing it. I've already checked a previous post (Error in CIBERSORTx) but unfortunately it still did not work.

This is a screenshot of part of the data I uploaded into CIBERSORTx:

I've tried both txt and tsv files to no avail.

In addition, this is a screenshot of the job parameters. Enabling or disabling batch correction did not affect it, nor did changing the permutations.

I'm honestly at a loss for what to do especially since I am still new to all of this, so any help would be appreciated. Thank you!

[nguyenn6]

did you ever figure it out? i'm having the same issue.

[finch]

Hey! I had this issue and I think I can help- could you take a screenshot of the .txt file opened in the notepad?

Answer 1

[jurriaanjanssen]

Hi,

I have added an answer to the previous post which might be helpful (regarding this error using the Docker version).