Hi All,
I have a question about the directionality information in STRING PPI database. There is a file named protein.actions.v11.0.txt in STRING PPI version 11 and looks like as follows:
item_id_a item_id_b mode action is_directional a_is_acting score
10090.ENSMUSP00000000001 10090.ENSMUSP00000000153 binding f f 901
10090.ENSMUSP00000000001 10090.ENSMUSP00000000369 activation activation f f 155
10090.ENSMUSP00000000001 10090.ENSMUSP00000000574 activation activation f f 843
10090.ENSMUSP00000000001 10090.ENSMUSP00000000574 binding f f 921
10090.ENSMUSP00000000001 10090.ENSMUSP00000000574 catalysis t f 921
10090.ENSMUSP00000000001 10090.ENSMUSP00000000574 catalysis t t 921
10090.ENSMUSP00000000001 10090.ENSMUSP00000000574 reaction f f 921
10090.ENSMUSP00000000001 10090.ENSMUSP00000000574 reaction t f 921
In this file, there are two fields for denoting the regulation, named is_directional and a_is_acting. There is some information about a_is_acting field but not about is_directional field. My question is that if is_directional is TRUE, does that mean either protein is regulated by the other?
For example, for the 6th and 8th (last) interaction listed above, as is_directional is TRUE and a_is_acting is FALSE, can we conclude that protein_b regulates protein_a?