How can I have the structure of a gene (or haplotypes of a gene) on the top of the LD plot on Haploview

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8 months ago

mona.patoughi • 0

Hi,

I used Linkage Format on Haploview to have my LD plot:

enter image description here

But also I need to have the gene structure on the top of my LD plot, something like this : enter image description here

How can I add this section? thanks a lot for the help.

LDplot Haploview HaplotypeBlocks LinkageFormat • 497 views

ADD COMMENT • link 8 months ago by mona.patoughi • 0

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The example picture looks like a montage of the LD-plot with gene models from a - possibly UCSC - genome browser. If it is only for a single figure, doing something similar may be easiest. Set both applications to display the identical genomic range and export the images.

ADD REPLY • link 8 months ago by Michael 55k

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Thanks a lot. How about the below one? I am not sure if it is a montage one :

enter image description here

ADD REPLY • link 8 months ago by mona.patoughi • 0

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