Get_Homologues

Question

[utkarsh.sood]

Hi all,

I am running Get_homologues (https://github.com/eead-csic-compbio/get_homologues) on more than 230 genomes and getting zero clusters in between few genomes during the analysis.

The net result is therefore zero clusters of homologues in the entire analysis.

However, when these zero cluster genomes are run separately the analysis provide adequate core genes among the genomes.

Please help to resolve this error.

Answer 1

[b.contreras.moreira]

Hi utkarsh.sood, my first guess would be that there might have been issues while running some BLASTP jobs (230x230). You could test that by testing the size of the *fasta.blast.gz files in the results directory, any failing jobs should be smaller than the rest.

PS Please post GET_HOMOLOGUES issues preferably at https://github.com/eead-csic-compbio/get_homologues/issues