Download CAZy database

Question

[anu014]

Hello Biostars,

Can anyone tell me how to download CAZy database ? http://www.cazy.org/

Or is it even accessible ?

Please help. Thanks in advance. :)

[Doomhammer]

the latest CAZy sequence list (http://www.cazy.org/) contains over 550,000 JGI protein sequences . Is there an easy way to get these sequences in a fasta file?

[GenoMax]

There is a "Download Cazy" link at top of the page you linked. Is that not what you need?

[Doomhammer]

This link only gives the CAZy sequence list, like this: AA5_2 Bacteria Alloactinosynnema sp. L-07 CRK61066.1 ncbi AA5_2 Eukaryota Alternaria alternata MPI-PUGE-AT-0064 v1.0 485312 jgi AA5_2 Eukaryota Alternaria alternata MPI-PUGE-AT-0064 v1.0 457998 jgi

no attached sequences

[GenoMax]

Looks like there is a file from 2023 at the link included by @Yanbin below https://bcb.unl.edu/dbCAN2/download/CAZyDB.07262023.fa

If that is not it then your best bet is to email [e-mail] and ask. Post their answer here.

Answer 1

[yanbin.yin]

The URL of dbCAN has changed to http://bcb.unl.edu/dbCAN2/download/

Answer 2

[h.mon]

It seems CAZy download point do exist, but it is hidden. You can download a "CAZyDB.07202017.fa" at dbCAN.

[724303223]

I found out that dbCAN cannot be accessed recently,and there is nowhere to download CAZymes database anymore,what should I do to deal with that?

Please help. Thanks in advance. :)

[h.mon]

how to download cazy database