Entering edit mode
9 months ago
Hayler Edu
▴
40
Hello
I'm trying to use anvi-get-sequences-for-hmm-hits, using the hmm source campbell_et_al but I don't know how can I download the Hmm_source campbell_et_al.
Someone can help me?
This is my pipeline
anvi-get-sequences-for-hmm-hits -c contigs.db --hmm-sources Campbell_et_al --get-aa-sequences -o bacterial_SCGs.faa --no-wrap
And when I execute the pipeline I have this error
Config Error: At least one of the HMM sources you requested are missing form the HMMs the
contigs database knows about :/ Here they are: 'Campbell_et_al'