HISAT2 installation issue

Question

[eleven11]

Hello I am trying to run HISAT2. Everytime I run make I get the attached warnings. What does it mean and how can I fix it? Thank you!

[GenoMax]

Compiled binaries are available for macOS and Linux: http://daehwankimlab.github.io/hisat2/download/#version-hisat2-221

Answer 1

[Pierre Lindenbaum]

these are just warnings.

I think you can remove the warnings by changing things like

"ACGT"[ref[start+i]]

by

"ACGT"[(unsigned int)ref[start+i]]

[eleven11]

Hello! Thank you for your quick reply! When I try to run HISAT commands it saids commands not found so I believe that it isn't installed properly. I am also not familiar with command line so how would I what you recommended. Thank you again!

[Pierre Lindenbaum]

set the PATH https://opensource.com/article/17/6/set-path-linux or use a full path to the hisat excutable.