convert cds to seurat object

Question

[sooni]

Hello.

I want to make pseudo-bulk data from single cell data. I made cds from my single cell raw data. Now, I want to convert this cds format to seurat object. Is it possible?

Thank you for your help!

Answer 1

[edoardofilippi1998]

Did you try with "as.Seurat"? https://github.com/satijalab/seurat-wrappers/blob/master/docs/monocle3.md

integrated.sub <- as.Seurat(cds)

[sooni]

Yes, I tried with as.Seurat. But there is an error follwing: Error: No data in provided assay - logcounts. How can I solve this problem?

[edoardofilippi1998]

Did you check the data in the assay of the cell_data_set object?