Problem with SRA
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7 months ago
Daniel • 0

BIOF521 presents an SRR957824 for E. coli. However, when submitted to SRA, it comes up as "mouse". How can this be explained?

SRA • 413 views
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Entering edit mode
7 months ago
noodle ▴ 590

SRA has a feature to see how reads align to the tree of life. Most reads of this sample are bacteria.

Why do you think there is mouse there?

https://trace.ncbi.nlm.nih.gov/Traces/?view=run_browser&acc=SRR957824&display=analysis

SRR957824

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Entering edit mode
7 months ago
GenoMax 147k

However, when submitted to SRA, it comes up as "mouse".

What does that mean? I can see an entry that is E. coli for that accession : https://www.ncbi.nlm.nih.gov/sra/?term=SRR957824

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