How can I plot the PCA with the raw count mRNA seq data?
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8 months ago
Yoomi ▴ 20

I want to plot the PCA with the raw count mRNA seq data. but I wonder if the methods of normalization, quantile normalization or vst, is correct, because the results of the PCA is different. How do I normalize the raw count data before the PCA plotting?

PCA normalization • 233 views
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