Creating a BSgenome data package from a NCBI assembly - Virus
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7 months ago
JirMan ▴ 40

Hello everyone, I've been trying to create a BSgenome data package from the NCBI assembly of a dsDNA virus using the BSgenome and BSgenomeForge packages in R with this command:

HzNV1 <- forgeBSgenomeDataPkgFromNCBI(assembly_accession="GCF_002826785.1", pkg_maintainer = "name", organism = "Heliothis zea nudivirus 1", circ_seqs="NC_074969.1", destdir = "path")

However, after running this I receive the following error:

Error in get_circ_seqs_for_unregistered_assembly_or_genome(assembly_accession, : 'circ_seqs' contains sequence names that do not belong to the specified assembly (GCF_002826785.1)

I've basically been following the BSgenomeForge manual (March 27, 2024) as a reference, so I'm not sure what the issue might be. Did anyone run across a similar issue in past? Any help or ideas on how to solve this are highly appreciated.

Thank you for taking the time to read my post!

Cheers

Virus BSgenomeForge BSgenome R • 207 views
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