SeuratDisk: including "counts" dataset in conversion to AnnData
0
0
Entering edit mode
7 months ago
roussine ▴ 10

Hello all -

as I can see, the Convert function of SeuratDisk (from h5Seurat to h5ad) will never touch the counts dataset (not-normalised matrix) of the default assay (e.g., "RNA") in a h5Seurat object, as it gives priority to "scale.data" (variable features only) and then "data" (normalised matrix) when filling X.

Is there a way to force such conversion?..

Thanks a lot in advance for any help

Leo

Seurat SeuratDisk AnnData • 294 views
ADD COMMENT

Login before adding your answer.

Traffic: 2442 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6