Entering edit mode
8 months ago
synat.keam
▴
100
Dear fellows,
Not sure anyone has experienced using cellchat
for cell/cell communication.
I run netVisual_bubble
and netVisual_chord_gene
functions of cellchat to visualize cell communication, but got too many receptor/ligand interaction. I still would like to cover all signalling pathways, but I wanted to keep only the most maximum communication probability. I tried thresh argument, but did not work. Kindly review the attach. The documentation is found here https://rdrr.io/github/sqjin/CellChat/man/netVisual_bubble.html.
netVisual_bubble(cellchat.first.art, sources.use = 3, targets.use = c(0:21),
thresh = 0.05, remove.isolate = FALSE)
netVisual_chord_gene(cellchat.first.art,
sources.use = 3,
targets.use = c(0:21),
lab.cex = 0.7,
legend.pos.y = 0,
small.gap = 2)
Hope you could help!
Kind Regards,
Synat