Hello,
I am using an older version of a tool on WSL and it's showing this when i run my code
smalt index -k 11 -s 1 indexedsmalt12 st22combined_reference.fasta
Segmentation fault
Since this version is not on conda env, i downloaded and extracted on my WSL, and Send it to /bin
and set it in the $PATH
.
I don't know where I went wrong
Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why not opt for bwa or any well-maintained tools?
I am trying to reproduce some bioinformatics data from a research paper-this paper as i was asked to work on an MRSA bioinfo project, so i chose to reproduce data from a research paper instead of coming up with an individual project since im new to the field and i'm working on a laptop which doesnt have a lot of RAM (8GB) and am running out of disk space. And i found out that you have to use similar versions from the paper to be able to reproduce the same result.