Error in CIBERSORTx ($ operator is invalid for atomic vectors)

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7 months ago

star ▴ 10

Hi,

I'm trying to run CIBERSORTx but keep getting the following error:

CIBERSORTx error

I can't figure out what's causing it. I've already checked a previous post (Error in CIBERSORTx) but unfortunately it still did not work.

This is a screenshot of part of the data I uploaded into CIBERSORTx:

enter image description here

I've tried both txt and tsv files to no avail.

In addition, this is a screenshot of the job parameters. Enabling or disabling batch correction did not affect it, nor did changing the permutations.

enter image description here

I'm honestly at a loss for what to do especially since I am still new to all of this, so any help would be appreciated. Thank you!

RNA-Seq CIBERSORTx deconvolution cibersort • 635 views

ADD COMMENT • link updated 12 weeks ago by Ram 44k • written 7 months ago by star ▴ 10

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did you ever figure it out? i'm having the same issue.

ADD REPLY • link 4 months ago by nguyenn6 • 0

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Hey! I had this issue and I think I can help- could you take a screenshot of the .txt file opened in the notepad?

ADD REPLY • link 3 months ago by finch • 0

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