handling bio replicates for chromHMM

Question

[Hasan_Daaboul]

Hello everyone! I am performing genomic states annotation using ChIP-seq bam files for different epigenomic markers experiments, each experiment has 2 biological replicates (2 bam files). how to deal with these bio replicates before I input them into chromHMM, can I merge them or there is another way to deal with them? Thank you!