Chromosomal distribution of the trancscripts count
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6 months ago
Varsha • 0

I have a list of non coding transcripts and I am trying to find their chromosome location. How do I proceed with it? Thanks in advance.

chrosome_location • 308 views
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Post example ID and also information about what organism these are from.

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6 months ago
ATpoint 86k

If you have an Ensembl ID or any other canonical transcript name then I would simply load a GTF that matches your annotations, e.g. into R using rtracklayer::import(), and then simply do a left_join operation. GTFs contain both transcript names/IDs and their coordinates in genomic space. For code examples please post a reproducible example.

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