CNVnator Installation

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6 months ago

Wasim • 0

Hello

I am trying to install CNVnator on HPC cluster but facing some problem. Root and samtools are already installed but I couldn't install CNVnator. Can anyone suggest a good source for installing it or alternate software for Bovine WGS?

Thanks

CNV CNVnator WGS • 529 views

ADD COMMENT • link updated 6 months ago by Ram 44k • written 6 months ago by Wasim • 0

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Please try using conda and talk to your sysadmin.

ADD REPLY • link 6 months ago by Ram 44k

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I have tried with conda but it couldn't work

ADD REPLY • link 6 months ago by Wasim • 0

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"it couldn't work" says nothing on what actually happened. It is slightly better at being nothing than "facing some problem". Do you realize that we cannot help you without you being as specific as you can?

ADD REPLY • link 6 months ago by Ram 44k

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Do you have singularity installed on the HPC?

ADD REPLY • link 6 months ago by Asaf 10k

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yes I have this apptainer version 1.3.1-1.el8

ADD REPLY • link 6 months ago by Wasim • 0

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