kegg pathway analysis
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Entering edit mode
6 months ago
yuxiang • 0

Hi! As I want to use the eQuilibrator api to calculate my metabolic pathway, there are more than 10 reactions, I want to know how can I upload a tsv edition file on KEGG about these reactions. In eQuilibrator, it showed a example of cell fermentation. Below is the tsv file:

!!!SBtab DocumentName='Pathway Model' SBtabVersion='1.0'    
!!SBtab TableName='Reaction' TableID='Reaction' TableType='Reaction'    
!ReactionFormula    !RelativeFlux
D-Glucose + ATP <=> D-Glucose 6-phosphate + ADP 1
D-Glucose 6-phosphate <=> D-Fructose 6-phosphate    1
ATP + D-Fructose 6-phosphate <=> ADP + Fructose-1,6-bisphosphate    1
Fructose-1,6-bisphosphate <=> Glycerone phosphate + D-Glyceraldehyde 3-phosphate    1
Glycerone phosphate <=> D-Glyceraldehyde 3-phosphate    1
Pi + NAD+ + D-Glyceraldehyde 3-phosphate <=> NADH + 1,3-Bisphosphoglycerate 2
ADP + 1,3-Bisphosphoglycerate <=> ATP + D-Glycerate-3-phosphate 2
D-Glycerate-3-phosphate <=> D-Glycerate-2-phosphate 2
D-Glycerate-2-phosphate <=> Phosphoenolpyruvate + H2O   2
ADP + Phosphoenolpyruvate <=> Pyruvate + ATP    2
Pyruvate <=> Acetaldehyde + CO2 2
Acetaldehyde + NADH <=> Ethanol + NAD+  2
metabolic-pathway Gibbs-energy • 183 views
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