TSS sites annotation for hg38
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6 months ago
octpus616 ▴ 120

Hi,

I am looking for a TSS sites annotation for hg38, I noted FANTOM5 has published a annotation file, https://fantom.gsc.riken.jp/5/datafiles/phase1.3/extra/TSS_classifier/.

However, since this file was created a long time ago, I cannot determine whether the data is based on the hg38 version or an earlier hg19 version. Are there any more recent annotation files available?

Regards.

tss hg38 annotation • 421 views
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Hi, thanks for your suggestion, but the bed file in https://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_latest/extra/CAGE_peaks/breakdown/ is differ from https://fantom.gsc.riken.jp/5/datafiles/phase1.3/extra/TSS_classifier/

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