How to count number of haplotypes and haplotype frequency from phased vcf files?
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5 months ago
Arline • 0

Hello,

I'm pretty new in bioinformatic analysis

I have a phased vcf files that I create with beagle tools in linux and now I want to count number of uniq haplotypes and frequency of haplotypes from my phased vcf files

I tried to find script using whatshap tools, bcftools, beagle but I can't find tutorial

Can someone help me for this?

Thanks in advance

Arline

haplotypes • 245 views
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