gene annotation for mapman

Question

[hellokwmin]

Hello, Stars,

I am analyzing RNA-seq data. For this, I would like to perform mapmap in order to get insight into gene expression based matbolism. I have already done funtional annotation based on Araport 11 so that I have accessionID corresponding to my own geneID.

In order to perform mapman, I have to annotate my accessionID with affimetrix geneID (?) as far as I know. So, I need the affymetrix database. But I could not get the access to ftp server such as ftp://ftp.arabidopsis.org/home/tair/Microarrays/Affymetrix/ using cmd as well as web browser...

Is there any way to get that server? or is it permanantly closed?

or,

is there somebody that know how to perform manman? in my case?

Thank you.

Answer 1

[GenoMax]

Looks like the Affymetrix array files are available here: https://www.arabidopsis.org/download/list?dir=Microarrays%2FAffymetrix