Please Help Me Understand GWAS Results
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4 months ago
chloek88 • 0

Hi there,

It's my first time working with GWAS so please bare with me. I've used both GAPIT and rMVP to run some GWAS analysis. My phenotype is categorical ordinal, (ie. a 1 to 5 scale). I've gotten significant SNPs but I don't quite understand how to interpret the results. How do I know if it is significant because it had higher associations to a rating of '1' vs '5'?

rMVP GWAS GAPIT • 378 views
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Post a result example. Not sure if this description is going to be sufficient for people to give you an answer. You can redact gene names/sample info if you are worried about that.

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Example of my phenotypic data input

Phenotype Data

Example of the results table

Results table

The phenotypic data + genomic data (.vcf) were used as the inputs for the analysis in rMVP.

Thank you.

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