Fastq files from control WGS X30 samples, Illumina Novaseq 6000

Question

[damian.loska]

Hi, do you know where I can find some public control data having these features:

• Illumina Novaseq 6000
• pair-end (150nt)
• covarege X30
• WGS

I've searched in SRA and ENA but I couldn't find any sutiable results.

I'd like to test my pipeline on WGS data.

Answer 1

[GenoMax]

Only place where this data may be available is in Illumina Basespace. Have you looked there?

If you don't need to have NovaSeq 6000 as a requirement then GIAB datasets will fit the bill: https://github.com/genome-in-a-bottle/giab_data_indexes