Split the fastqc file base on barcode

Question

[QX]

Hi all,

I have a single fastqc file with some designed barcode. How I would like to split the file into many different files depends on barcodes. However, I want to a loosely grep, that single alteration will still be accapted. For e.g. barcode GGCTTTAA, the alter GCCTTTAA or GC_TTTAA or GCC[N]TTAA will be still be accepted.

Does anyone have an idea?

Best

Answer 1

[GenoMax]

deML: https://github.com/grenaud/deML

demuxbyname.sh from BBMap suite. Run the program without options to see in-line help.

$ demuxbyname.sh

Written by Brian Bushnell
Last modified Jan 7, 2020

Description:  Demultiplexes sequences into multiple files based on their names,
substrings of their names, or prefixes or suffixes of their names.
Allows unlimited output files while maintaining only a small number of open file handles.